| MirGeneDB ID | Spu-Mir-2005 |
|---|
| Family name |
MIR-2005 (all species) |
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| Seed |
GUCCAAU |
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| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
spu-mir-2005
|
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| Paralogues |
|
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| Orthologues |
Pmi-Mir-2005
|
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| Node of Origin (locus) |
Eleutherozoa
|
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| Node of Origin (family) |
Eleutherozoa
|
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Genome context
(Spur_5.0) |
AAGJ06000820.1: 1476067-1476130 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCCUCGCCUCUACUUGUCAAUCUUUGGUGCAGUCCAAUAGGGAGGGCAUUGCAGGUGAUAUUUGAAAGCCCUGCAGUGGCUCCUAUUGGUCAUUACCAGAUGAUUGACAUCACAUCCAGAGAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCCUCGCCUCUACUUGU- -| CAGU GA G GUGAUAU
CAAUC UUUGGUG CCAAUAGG GG CAUUGCAG U
GUUAG AGACCAU GGUUAUCC UC GUGACGUC U
CUAGAGACCUACACUACA U^ UACU -- G CCGAAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although there is no star recorded for Mir-2005 expression of the 5p arm is deeply conserved across eleutherozoan echinoderms. |
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| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Spu-Mir-2005_5p |
| mirBase accession | MIMAT0009746 |
|---|
| Sequence |
0- AGUCCAAUAGGGAGGGCAUUGCAG -24
Get sequence
|
|---|
| Star sequence |
Spu-Mir-2005_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
42- GCAGUGGCUCCUAUUGGUCAUU -64
Get sequence
|
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