| MirGeneDB ID | Pmi-Mir-2010 |
|---|
| Family name |
MIR-2010 (all species) |
|---|
| Seed |
UACUGUU |
|---|
| Species |
Bat starfish (Patiria miniata) |
|---|
| MiRBase ID |
pmi-mir-2010
|
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| Paralogues |
|
|---|
| Orthologues |
Spu-Mir-2010
|
|---|
| Node of Origin (locus) |
Eleutherozoa
|
|---|
| Node of Origin (family) |
Eleutherozoa
|
|---|
Genome context
(Pmin1) |
JH771100.1: 27470-27530 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGGAUCUUCCUAAUUGGGUACCUCAGCCGAGGGCUGCCUUCUUCAGUACUUUGUUCAAUGACAUCCAAAUUACUGUUGAUGUCAGCCCCUCGGCUGUGUACCAAGUGCAUCGUGGGAAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGGAUCUUCCUAAUUGG---| CU - CCU UU CUUUGUUCAA
GUAC CAGCCGAGGG CUG UC CAGUA U
CAUG GUCGGCUCCC GAC AG GUCAU G
GGUAAGGGUGCUACGUGAAC^ U- C UGU UU UAAACCUACA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pmi-Mir-2010_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGCUGCCUUCUUCAGUACUU -21
Get sequence
|
|---|
| Mature sequence |
Pmi-Mir-2010_3p |
| mirBase accession | MIMAT0032184 |
|---|
| Sequence |
39- UUACUGUUGAUGUCAGCCCCUC -61
Get sequence
|
|---|
