MirGeneDB ID | Spu-Mir-2010 |
Family name |
MIR-2010 (all species) |
Seed |
UACUGUU |
Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
MiRBase ID |
spu-mir-2010
|
Paralogues |
|
Orthologues |
Pmi-Mir-2010
|
Node of Origin (locus) |
Eleutherozoa
|
Node of Origin (family) |
Eleutherozoa
|
Genome context (Spur_5.0) |
AAGJ06000012.1: 33083243-33083307 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCUUCCAUGCUCUCAUGGUACGCCAGCAAGGGCUGGUUUCUCCAGUAAUUUGUAUCUUCAUUAUAGCAUCAAUUACUGUUGAUGUCAGCCCCUUGCUGGUAUACUGCCCUCUACAAUCCUGAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUCUUCCAUGCUCUCAU-- CG -| UU UC UGUAUCUUC
GGUA CCAGCAA GGGCUGG UC CAGUAAUU A
UCAU GGUCGUU CCCGACU AG GUCAUUAA U
GUAGUCCUAACAUCUCCCG AU C^ GU UU CUACGAUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Spu-Mir-2010_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGCUGGUUUCUCCAGUAAUU -21
Get sequence
|
Mature sequence |
Spu-Mir-2010_3p |
mirBase accession | MIMAT0009751 |
Sequence |
43- UUACUGUUGAUGUCAGCCCCUU -65
Get sequence
|