MirGeneDB 3.0

MirGeneDB ID

Pve-Novel-1

Family name PVE-NOVEL-1 (all species)
Seed GAGGUAG
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Dentaliidae
Node of Origin (family) Dentaliidae
Genome context
(PVE_manual_microRNAloci)
CM062288.1:206768251-206768509: 101-159 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCUGUUAUAUUUCAGCUCUUGUGUAAGGUGAGGUAGUUUUCAAUUCGCUCAGAAUAGUAAAAUAGGCGGAUACAAGACUACCUCGCUCUACGCAGAGCAUUCUCUGCGACAGACUGU
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Structure
        10           20        30        40        50         
UGUCUGUUAUAUUUCAG---|   U     AG             CA       CAGAAUA 
                    CUCU GUGUA  GUGAGGUAGUUUU  AUUCGCU       \
                    GAGA CGCAU  CGCUCCAUCAGAA  UAGGCGG       G
UGUCAGACAGCGUCUCUUAC^   -     CU             CA       AUAAAAU 
       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pve-Novel-1_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUUUUCAAUUCGCU -21
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Star sequence

Pve-Novel-1_3p*

mirBase accessionNone
Sequence
38- CGGAUACAAGACUACCUCGCU -59
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