MirGeneDB ID | Pve-Novel-1 |
Family name |
PVE-NOVEL-1 (all species) |
Seed |
GAGGUAG |
Species |
Vernerds tusk shell (Pictodentalium vernedei) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
Dentaliidae
|
Node of Origin (family) |
Dentaliidae
|
Genome context (PVE_manual_microRNAloci) |
CM062288.1:206768251-206768509: 101-159 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUCUGUUAUAUUUCAGCUCUUGUGUAAGGUGAGGUAGUUUUCAAUUCGCUCAGAAUAGUAAAAUAGGCGGAUACAAGACUACCUCGCUCUACGCAGAGCAUUCUCUGCGACAGACUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCUGUUAUAUUUCAG---| U AG CA CAGAAUA
CUCU GUGUA GUGAGGUAGUUUU AUUCGCU \
GAGA CGCAU CGCUCCAUCAGAA UAGGCGG G
UGUCAGACAGCGUCUCUUAC^ - CU CA AUAAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pve-Novel-1_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUUUUCAAUUCGCU -21
Get sequence
|
Star sequence |
Pve-Novel-1_3p* |
mirBase accession | None |
Sequence |
38- CGGAUACAAGACUACCUCGCU -59
Get sequence
|