MirGeneDB ID | Pve-Novel-2 |
Family name |
PVE-NOVEL-2 (all species) |
Seed |
UUGCUCA |
Species |
Vernerds tusk shell (Pictodentalium vernedei) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
Dentaliidae
|
Node of Origin (family) |
Dentaliidae
|
Genome context (PVE_manual_microRNAloci) |
CM062288.1:273121784-273122043: 101-160 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGCAAGGAAGAGAAGAGCUUCCUCACGGUUUUGCUCAGACUUCAGACAAUCAGAAGAGAAGUCACCUGGUGUCGUUGUCUGAGUCAACCUGUGAGUCGCAUAGCAUCAACGAGUCUACG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGCAAGGAAGAGAAGA---| UUC U U UUCA A AGAAGAG
GC CUCACGG UU GCUCAGAC GACA UC A
CG GAGUGUC AA UGAGUCUG CUGU GG A
GCAUCUGAGCAACUACGAUA^ CU- C C UUG- - UCCACUG
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pve-Novel-2_5p |
mirBase accession | None |
Sequence |
0- UUUGCUCAGACUUCAGACAAUC -22
Get sequence
|
Star sequence |
Pve-Novel-2_3p* |
mirBase accession | None |
Sequence |
38- GGUGUCGUUGUCUGAGUCAACC -60
Get sequence
|