MirGeneDB 3.0

MirGeneDB ID

Pve-Novel-2

Family name PVE-NOVEL-2 (all species)
Seed UUGCUCA
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Dentaliidae
Node of Origin (family) Dentaliidae
Genome context
(PVE_manual_microRNAloci)
CM062288.1:273121784-273122043: 101-160 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCAAGGAAGAGAAGAGCUUCCUCACGGUUUUGCUCAGACUUCAGACAAUCAGAAGAGAAGUCACCUGGUGUCGUUGUCUGAGUCAACCUGUGAGUCGCAUAGCAUCAACGAGUCUACG
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Structure
        10           20        30        40        50        60
UUGCAAGGAAGAGAAGA---| UUC       U  U        UUCA    A  AGAAGAG 
                    GC   CUCACGG UU GCUCAGAC    GACA UC       A
                    CG   GAGUGUC AA UGAGUCUG    CUGU GG       A
GCAUCUGAGCAACUACGAUA^ CU-       C  C        UUG-    -  UCCACUG 
.       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pve-Novel-2_5p

mirBase accessionNone
Sequence
0- UUUGCUCAGACUUCAGACAAUC -22
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Star sequence

Pve-Novel-2_3p*

mirBase accessionNone
Sequence
38- GGUGUCGUUGUCUGAGUCAACC -60
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