| MirGeneDB ID | Rph-Novel-10 |
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| Family name |
RPH-NOVEL-10 (all species) |
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| Seed |
UUGAACG |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018532.1: 2388912-2388969 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCUUCAUAUUAUAUGUUGAUGUUUCAUCCUUGGGAACUUUUGUUUAAUGAUAGACAAAUUAAACAUUGAACGAACGUUUCCGAGAGUGACGCGUCAUGACGCAUCAGAGGAACAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUCUUCAUAUUAUAUGU--| U UC U AUAGAC
UGAUGU UCA CUUGGGAAC UUUGUUUAAUG A
ACUGCG AGU GAGCCUUUG AAGCAAGUUAC A
AGACAAGGAGACUACGCAGU^ C GA C AAAUUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Rph-Novel-10_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUGGGAACUUUUGUUUAAUGA -22
Get sequence
|
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| Mature sequence |
Rph-Novel-10_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AUUGAACGAACGUUUCCGAGAG -58
Get sequence
|
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