MirGeneDB ID | Rph-Novel-11 |
Family name |
RPH-NOVEL-11 (all species) |
Seed |
CUACCUG |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
R. philippinarum
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Node of Origin (family) |
R. philippinarum
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Genome context (Ruditapes_GCA_009026015) |
QUSP01001701.1: 75448-75505 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUGACGUAUGUUGUAUAUGACGGUUGUACGUCGUUGUUAUCACAGAUAUAGUGACGCUGAUUACACUCUACCUGUGUCAACAGCGACAUUUGCCCGUUUCUCUGACGUGUUCCAUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGACGUAUGUUGUAUAU--| UU UAC AU A U GACGC
GACGG G GUCGUUGUU CACAG UA AGU U
UUGCC U CAGCGACAA GUGUC AU UCA G
ACUUACCUUGUGCAGUCUCU^ CG UUA CU C C CAUUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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Star sequence |
Rph-Novel-11_5p* |
mirBase accession | None |
Sequence |
0- UCGUUGUUAUCACAGAUAUAGU -22
Get sequence
|
Mature sequence |
Rph-Novel-11_3p |
mirBase accession | None |
Sequence |
36- UCUACCUGUGUCAACAGCGACA -58
Get sequence
|