| MirGeneDB ID | Rph-Novel-2-P1b |
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| Family name |
RPH-NOVEL-2 (all species) |
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| Seed |
AUAUCUG |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Novel-2-P1a
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018529.1: 3832037-3832093 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUUGUGUAGGAAAGGCUUCAGCUUGAAUAUCGCUGUUGCUGCAGGUAUUGUGUUUCACAUUAGCUAUAUCUGUGGUAACUACGAUAUUUUGGCUGUUUUGUAACAUCUUCUUGAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUUGUGUAGGAAAGGCUU--| U CU UG U GUUUC
CAGCU GAAUAUCG GUUGC CAGGUAU GU \
GUCGG UUUAUAGC CAAUG GUCUAUA CG A
AGAGUUCUUCUACAAUGUUUU^ U AU GU U AUUAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
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|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Rph-Novel-2-P1b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCGCUGUUGCUGCAGGUAUUGU -22
Get sequence
|
|---|
| Mature sequence |
Rph-Novel-2-P1b_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UAUAUCUGUGGUAACUACGAUA -57
Get sequence
|
|---|
