| MirGeneDB ID | Rph-Novel-6-v2 |
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| Family name |
RPH-NOVEL-6 (all species) |
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| Seed |
CGCUGUU |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Novel-6-v1
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
QUSP01001701.1: 75446-75503 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUGGAACACGUCAGAGAAACGGGCAAAUGUCGCUGUUGACACAGGUAGAGUGUAAUCAGCGUCACUAUAUCUGUGAUAACAACGACGUACAACCGUCAUAUACAACAUACGUCAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGGAACACGUCAGAGAA--| GCAA C A G UAAU
ACGG AUGUCG UGUUG CACAGGUA AGUG C
UGCC UGCAGC ACAAU GUGUCUAU UCAC A
UAUACUGCAUACAACAUAUAC^ AACA A A A UGCG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Mature sequence |
Rph-Novel-6-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCGCUGUUGACACAGGUAGAGUG -23
Get sequence
|
|---|
| Star sequence |
Rph-Novel-6-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CUAUAUCUGUGAUAACAACGACG -58
Get sequence
|
|---|
