| MirGeneDB ID | Rph-Novel-9 |
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| Family name |
RPH-NOVEL-9 (all species) |
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| Seed |
CGAUAAC |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018524.1: 2561619-2561676 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUGCAAGCCAGUAUCAAAGCGACAGAUAUUCGAUAACGACGAUCCGAGCACGUGUAAGGUAUUGUGUUCGGACUGUUGUUACCGAGUCUUUUUCUGCUUACUUCGUCAAAAUAUCAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUUGCAAGCCAGUAUCA- -| C U A A GUGUA
AAGC GA AGA AUUCG UAACGACG UCCGAGCAC A
UUCG CU UUU UGAGC AUUGUUGU AGGCUUGUG G
AACUAUAAAACUGCUUCA U^ U C C C UUAUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Mature sequence |
Rph-Novel-9_5p |
| mirBase accession | None |
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| Sequence |
0- UCGAUAACGACGAUCCGAGCAC -22
Get sequence
|
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| Star sequence |
Rph-Novel-9_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- GUUCGGACUGUUGUUACCGAGU -58
Get sequence
|
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