MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-12474

Family name MIR-12474 (all species)
Seed AUGAUGG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Neu-Mir-12474 
Node of Origin (locus) Australidelphia
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)
GL856627.1: 331-387 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCAAGUUCUAGAAUCCUCUGUGAGGGGAGCUGGCCAGGGCUCUCAUUCCCAGGAUGGCAUGGGAUGAUGGCACGGGCCGGCUCCCCGAGCAGGGUCCACGCAUCUGCAGGAAGG
Get precursor sequence
Structure
        10          20        30        40        50        
AAGUCAAGUUCUAGAAUC--|     GA            AGG   C       CAGGA 
                    CUCUGU  GGGGAGCUGGCC   GCU UCAUUCC     \
                    GGGACG  CCCCUCGGCCGG   CGG AGUAGGG     U
GGAAGGACGUCUACGCACCU^     AG            GCA   U       UACGG 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-12474_5p*

mirBase accessionNone
Sequence
0- AGCUGGCCAGGGCUCUCAUUCC -22
Get sequence
Mature sequence

Sha-Mir-12474_3p

mirBase accessionNone
Sequence
35- GAUGAUGGCACGGGCCGGCUCC -57
Get sequence