MirGeneDB ID | Sha-Novel-6-v1 |
---|---|
Family name | SHA-NOVEL-6 (all species) |
Seed | CUAUAAA |
Species | Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID | sha-mir-340 |
Paralogues | Sha-Novel-6-v2 |
Orthologues | |
Node of Origin (locus) | S. harrisii |
Node of Origin (family) | S. harrisii |
Genome context (DEVIL_add) |
GL834730.1: 741072-741130 [-] UCSC Ensembl |
Clustered miRNAs (< 50kb from Novel-6-v1) |
Novel-6-v1
GL834730.1: 741072-741130 [-]
UCSC
Ensembl
Novel-6-v2 GL834730.1: 741073-741129 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGACUGGAGAUCUUUAAGAUACAGGGUGUGACUAUAAAGUAAUGAGACUGGUGUUUGUGUGCAGGAUCAGUCUCAUUACUUUAUAGUCAUGCCUUGUAUAUGCUCAUCCUUCAUACUGAGet precursor sequence |
Structure | 10 20 30 40 50 UGACUGGAGAUCUUUAAG--| GUUUGU AUACAGGGUGUGACUAUAAAGUAAUGAGACUGGU \ UAUGUUCCGUACUGAUAUUUCAUUACUCUGACUA G AGUCAUACUUCCUACUCGUA^ GGACGU 110 100 90 80 70 60 |
Deep sequencing | |
Comment | This was previously called Mir-340. Note that the reverse complement is given in miRBase as the 5' ends of the arms are palindromic but in this orientation the 3' ends correspond to the processed miRNAs. |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Sha-Novel-6-v1_5p |
mirBase accession | None |
Sequence |
0- ACUAUAAAGUAAUGAGACUGGU -22
Get sequence
|
Star sequence | Sha-Novel-6-v1_3p* |
mirBase accession | MIMAT0022775 |
Sequence |
37- CAGUCUCAUUACUUUAUAGUCA -59
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|