MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-4820

Family name MIR-4820 (all species)
Seed GAGCUUC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4820
Paralogues
Orthologues Pfl-Mir-4820 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003124899.1: 533439-533498 [+]
Precursor
(pre-Mir +30nt flank)
CACAUUCAUCAUAACUGAGACCAUACCUAUGGCUACAGCACGGUUGUAUCAAUGCUGCUAACUGUGAUUGAGCUUCCUUGCUGUAGACAUGGGUAGGCCUUCCACAACAGCACUCGAUCA
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Structure
        10           20        30        40        50          
CACAUUCAUCAUAACUG---| A  A        G        C  UU  A     GCUGCU 
                    AG CC UACCUAUG CUACAGCA GG  GU UCAAU      \
                    UC GG AUGGGUAC GAUGUCGU CC  CG AGUUA      A
ACUAGCUCACGACAACACCU^ C  -        A        U  UU  -     GUGUCA 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Sko-Mir-4820_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCUACAGCACGGUUGUAUCAAU -23
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Mature sequence

Sko-Mir-4820_3p

mirBase accessionMIMAT0020021
Sequence
38- UGAGCUUCCUUGCUGUAGACAU -60
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