MirGeneDB ID | Sko-Mir-4820 |
Family name |
MIR-4820 (all species) |
Seed |
GAGCUUC |
Species |
Saccoglossus (Saccoglossus kowalevskii) |
MiRBase ID |
sko-mir-4820
|
Paralogues |
|
Orthologues |
Pfl-Mir-4820
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Skow_1.1) |
NW_003124899.1: 533439-533498 [+]
|
Precursor (pre-Mir +30nt flank) |
CACAUUCAUCAUAACUGAGACCAUACCUAUGGCUACAGCACGGUUGUAUCAAUGCUGCUAACUGUGAUUGAGCUUCCUUGCUGUAGACAUGGGUAGGCCUUCCACAACAGCACUCGAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CACAUUCAUCAUAACUG---| A A G C UU A GCUGCU
AG CC UACCUAUG CUACAGCA GG GU UCAAU \
UC GG AUGGGUAC GAUGUCGU CC CG AGUUA A
ACUAGCUCACGACAACACCU^ C - A U UU - GUGUCA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sko-Mir-4820_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGCUACAGCACGGUUGUAUCAAU -23
Get sequence
|
Mature sequence |
Sko-Mir-4820_3p |
mirBase accession | MIMAT0020021 |
Sequence |
38- UGAGCUUCCUUGCUGUAGACAU -60
Get sequence
|