MirGeneDB 3.0

MirGeneDB ID

Pfl-Mir-4820

Family name MIR-4820 (all species)
Seed GAGCUUC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues
Orthologues Sko-Mir-4820 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Pfl)
LD343718.1: 81400-81463 [+]
Precursor
(pre-Mir +30nt flank)
UCUCACCUGCCACAUCUGAGAUCUACAUAUGGCUACAGCAUGGUUGUAUCAAUGCUGCAAAAUAGCUCCGAUUGAGCUUCCUUGCUGUAGACAUGGGUAGACUCUCCAUUUCAGCACCAUUCUC
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Structure
        10         20         30        40        50        60  
UCUCACCUGCCACAUCU-    -|    A    G        U  UU  A     GCUGCAAA 
                  GAGA UCUAC UAUG CUACAGCA GG  GU UCAAU        \
                  CUCU AGAUG GUAC GAUGUCGU CC  CG AGUUA        A
CUCUUACCACGACUUUAC    C^    G    A        U  UU  -     GCCUCGAU 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pfl-Mir-4820_5p*

mirBase accessionNone
Sequence
0- GGCUACAGCAUGGUUGUAUCAAU -23
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Mature sequence

Pfl-Mir-4820_3p

mirBase accessionNone
Sequence
42- UGAGCUUCCUUGCUGUAGACAU -64
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