MirGeneDB ID | Pfl-Mir-4820 |
Family name |
MIR-4820 (all species) |
Seed |
GAGCUUC |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Sko-Mir-4820
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD343718.1: 81400-81463 [+]
|
Precursor (pre-Mir +30nt flank) |
UCUCACCUGCCACAUCUGAGAUCUACAUAUGGCUACAGCAUGGUUGUAUCAAUGCUGCAAAAUAGCUCCGAUUGAGCUUCCUUGCUGUAGACAUGGGUAGACUCUCCAUUUCAGCACCAUUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUCACCUGCCACAUCU- -| A G U UU A GCUGCAAA
GAGA UCUAC UAUG CUACAGCA GG GU UCAAU \
CUCU AGAUG GUAC GAUGUCGU CC CG AGUUA A
CUCUUACCACGACUUUAC C^ G A U UU - GCCUCGAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pfl-Mir-4820_5p* |
mirBase accession | None |
Sequence |
0- GGCUACAGCAUGGUUGUAUCAAU -23
Get sequence
|
Mature sequence |
Pfl-Mir-4820_3p |
mirBase accession | None |
Sequence |
42- UGAGCUUCCUUGCUGUAGACAU -64
Get sequence
|