MirGeneDB ID | Sko-Mir-4831 |
Family name |
MIR-4831 (all species) |
Seed |
UCGGCAA |
Species |
Saccoglossus (Saccoglossus kowalevskii) |
MiRBase ID |
sko-mir-4831
|
Paralogues |
|
Orthologues |
Pfl-Mir-4831
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Skow_1.1) |
NW_003120434.1: 28404-28464 [-]
|
Precursor (pre-Mir +30nt flank) |
UUUGGAAAGCCUUUGCGUGUUCUAGUGUCAGCAGAGUACAUCUUGCUGUAAAUGAGAAGUUAAUGUAUUUCGGCAAAUUGUACUCUCGCUAACAACUGGNNNNNNNNNNNNNNNNNNNNNN
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUGGAAAGCCUUUGCGUGUU- - C -| UC U GAGAAG
CUAG UGU AGC AGAGUACA UUGCUG AAAU \
GGUC ACA UCG UCUCAUGU AACGGC UUUA U
NNNNNNNNNNNNNNNNNNNNNN A A C^ UA - UGUAAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sko-Mir-4831_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCAGAGUACAUCUUGCUGUAAAU -23
Get sequence
|
Mature sequence |
Sko-Mir-4831_3p |
mirBase accession | MIMAT0020045 |
Sequence |
38- UUCGGCAAAUUGUACUCUCGCUA -61
Get sequence
|