MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-4838

Family name MIR-4838 (all species)
Seed GCUCCUG
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4838
Paralogues
Orthologues Pfl-Mir-4838 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003151253.1: 407594-407654 [-]
Precursor
(pre-Mir +30nt flank)
AACUUGGUGUAAUAAAUAAUCUGUUGAGGUAACUGAUACAAGUAGGAUUGUCAGAUAACAUCCAUAAUCUGCUCCUGCUUCUAUCAGUUCCCUCGGCUGAUACUUAUCUAGAUUGCACACU
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Structure
        10          20        30        40        50          
AACUUGGUGUAAUAAAUA--|  U       U        C        UUGUCAGAUAAC 
                    AUC GUUGAGG AACUGAUA AAGUAGGA            \
                    UAG CGGCUCC UUGACUAU UUCGUCCU            A
UCACACGUUAGAUCUAUUCA^  U       C        C        CGUCUAAUACCU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
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To
Star sequence

Sko-Mir-4838_5p* (predicted)

mirBase accessionNone
Sequence
0- AACUGAUACAAGUAGGAUUGUC -22
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Mature sequence

Sko-Mir-4838_3p

mirBase accessionMIMAT0020058
Sequence
39- UGCUCCUGCUUCUAUCAGUUCC -61
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