MirGeneDB ID | Sko-Mir-4838 |
Family name |
MIR-4838 (all species) |
Seed |
GCUCCUG |
Species |
Saccoglossus (Saccoglossus kowalevskii) |
MiRBase ID |
sko-mir-4838
|
Paralogues |
|
Orthologues |
Pfl-Mir-4838
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Skow_1.1) |
NW_003151253.1: 407594-407654 [-]
|
Precursor (pre-Mir +30nt flank) |
AACUUGGUGUAAUAAAUAAUCUGUUGAGGUAACUGAUACAAGUAGGAUUGUCAGAUAACAUCCAUAAUCUGCUCCUGCUUCUAUCAGUUCCCUCGGCUGAUACUUAUCUAGAUUGCACACU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACUUGGUGUAAUAAAUA--| U U C UUGUCAGAUAAC
AUC GUUGAGG AACUGAUA AAGUAGGA \
UAG CGGCUCC UUGACUAU UUCGUCCU A
UCACACGUUAGAUCUAUUCA^ U C C CGUCUAAUACCU
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sko-Mir-4838_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AACUGAUACAAGUAGGAUUGUC -22
Get sequence
|
Mature sequence |
Sko-Mir-4838_3p |
mirBase accession | MIMAT0020058 |
Sequence |
39- UGCUCCUGCUUCUAUCAGUUCC -61
Get sequence
|