MirGeneDB ID | Sma-Novel-1 |
Family name |
SMA-NOVEL-1 (all species) |
Seed |
UCACAGA |
Species |
Blood fluke (Schistosoma mansoni) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
S. mansoni
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Node of Origin (family) |
S. mansoni
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Genome context (GCA_000237925.5_SM_V9_genomic) |
HE601624.3: 28064339-28064437 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCAAUUGAACUACAUUUCUCGUAGUUUUACCUCACAGACUGACCUUAAGUUUAGACAACUAUUGACAAUCAGGAAGCAGCUGUUUCUUGAUUUUCAAUGGUUGUCUAACUUAAGGUCAGUCUGUGAUGUAAAACUAUGAAAAUUCAACAAUUUCCACAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
UCAAUUGAACUACAUUUC--| C UAGACAACUAUUGACAAUCAGGAAGCA
UCGUAGUUUUAC UCACAGACUGACCUUAAGUU \
AGUAUCAAAAUG AGUGUCUGACUGGAAUUCAA G
AACACCUUUAACAACUUAAA^ U UCUGUUGGUAACUUUUAGUUCUUUGUC
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ce |
Ce |
Ce |
Eg |
Eg |
Eg |
Eg |
Eg |
Eg |
Mi |
Mi |
Sc |
Sc |
Sc |
Sm |
Sm |
Sp |
Sp |
Sp |
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Mature sequence |
Sma-Novel-1_5p |
mirBase accession | None |
Sequence |
0- CUCACAGACUGACCUUAAGUU -21
Get sequence
|
Co-mature sequence |
Sma-Novel-1_3p |
mirBase accession | None |
Sequence |
78- CUUAAGGUCAGUCUGUGAUGU -99
Get sequence
|