MirGeneDB 3.0

MirGeneDB ID

Sma-Novel-1

Family name SMA-NOVEL-1 (all species)
Seed UCACAGA
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. mansoni
Node of Origin (family) S. mansoni
Genome context
(GCA_000237925.5_SM_V9_genomic)
HE601624.3: 28064339-28064437 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAUUGAACUACAUUUCUCGUAGUUUUACCUCACAGACUGACCUUAAGUUUAGACAACUAUUGACAAUCAGGAAGCAGCUGUUUCUUGAUUUUCAAUGGUUGUCUAACUUAAGGUCAGUCUGUGAUGUAAAACUAUGAAAAUUCAACAAUUUCCACAA
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Structure
        10          20        30        40        50        60        70         
UCAAUUGAACUACAUUUC--|           C                    UAGACAACUAUUGACAAUCAGGAAGCA 
                    UCGUAGUUUUAC UCACAGACUGACCUUAAGUU                           \
                    AGUAUCAAAAUG AGUGUCUGACUGGAAUUCAA                           G
AACACCUUUAACAACUUAAA^           U                    UCUGUUGGUAACUUUUAGUUCUUUGUC 
       150       140       130       120       110       100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Mature sequence

Sma-Novel-1_5p

mirBase accessionNone
Sequence
0- CUCACAGACUGACCUUAAGUU -21
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Co-mature sequence

Sma-Novel-1_3p

mirBase accessionNone
Sequence
78- CUUAAGGUCAGUCUGUGAUGU -99
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