| MirGeneDB ID | Sme-Mir-2148 |
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| Family name |
MIR-2148 (all species) |
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| Seed |
GAAAUUC |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2148
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
S. mediterranea
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000043_dd_Smes_g4_43: 3192881-3192936 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGACAUGUCGUAAGUAACCAGUUUAUCAGAGAAAUUCUGUGGUCUUGAUUGUAAAUGAUAUUAUACUGGCCCACAAAAUUUCUUUUAUUAAACGUUUGAACUUCAUUUAUAAAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAGACAUGUCGUAAGUAACCA- UC-| C U UGAUUGUAAA
GUUUA AGAGAAAUU UGUGG CU U
CAAAU UUUCUUUAA ACACC GG G
AAAAAUAUUUACUUCAAGUUUG UAU^ A C UCAUAUUAUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Mir-2148_5p |
| mirBase accession | MIMAT0011224 |
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| Sequence |
0- AGAAAUUCUGUGGUCUUGAUU -21
Get sequence
|
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| Star sequence |
Sme-Mir-2148_3p* |
| mirBase accession | MIMAT0012131 |
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| Sequence |
34- UACUGGCCCACAAAAUUUCUUU -56
Get sequence
|
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