| MirGeneDB ID | Sme-Mir-2159 |
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| Family name |
MIR-2159 (all species) |
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| Seed |
GCCUUUU |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2159
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
S. mediterranea
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000024_dd_Smes_g4_24: 706635-706691 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAAUUUUUUAAAUGCAAAUGAAUUCAAAACUGCCUUUUCUUUGAGUAGCUGUCCGCAGACAGGUGGAGCUGCCAAAUAAAGGGUGAUUUGGAAUUCAUUCAUCGUAACAAAUUUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAAUUUUUUAAAUGCAA--| A CU C A UG CAG
AUGAAUUC AAA GCCUUUU UUUG GUAGC UCCG A
UACUUAAG UUU UGGGAAA AAAC CGUCG AGGU C
UAGUUUAAACAAUGCUACU^ G AG U - -- GGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Mir-2159_5p |
| mirBase accession | MIMAT0011252 |
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| Sequence |
0- UGCCUUUUCUUUGAGUAGCUGUCCG -25
Get sequence
|
|---|
| Star sequence |
Sme-Mir-2159_3p* |
| mirBase accession | MIMAT0012150 |
|---|
| Sequence |
35- GAGCUGCCAAAUAAAGGGUGAU -57
Get sequence
|
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