| MirGeneDB ID | Spu-Mir-4847 |
|---|
| Family name |
MIR-4847 (all species) |
|---|
| Seed |
AAUGAUG |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
spu-mir-4847
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. purpuratus
|
|---|
| Node of Origin (family) |
S. purpuratus
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000004.1: 4948627-4948690 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGAGGAGAUGGCGCACAUACUCUCACCUCAUAAUGAUGGCGCGGUGCGGUGCGAUGUGAUAUCAAAAAAUUCGCUCUCAUUCGCCAUCAUUCUUAGGUGUAGUUAGCUCAGCCAUGCAAUUCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGAGGAGAUGGCGCACAU---| CU CAU C C U UGUGAUA
ACU CACCU AAUGAUGGCG GGUG GG GCGA U
UGA GUGGA UUACUACCGC UUAC UC CGCU C
CACUUAACGUACCGACUCGAU^ U- UUC - - U UAAAAAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although there is no star recorded for Mir-4847 expression of the 5p arm is deeply conserved across echinoid echinoderms. |
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Spu-Mir-4847_5p |
| mirBase accession | MIMAT0020069 |
|---|
| Sequence |
0- UAAUGAUGGCGCGGUGCGGUGCGA -24
Get sequence
|
|---|
| Star sequence |
Spu-Mir-4847_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
42- GCUCUCAUUCGCCAUCAUUCUU -64
Get sequence
|
|---|
