MirGeneDB ID | Spu-Novel-1-P1 |
Family name |
SPU-NOVEL-1 (all species) |
Seed |
CGACUUC |
Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
MiRBase ID |
|
Paralogues |
Spu-Novel-1-P2
|
Orthologues |
|
Node of Origin (locus) |
S. purpuratus
|
Node of Origin (family) |
S. purpuratus
|
Genome context (Spur_5.0) |
AAGJ06000007.1: 11087281-11087343 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGCGAGGGACUGCACAACGGCUCAGCUGUCGACUUCCCUAGAGGGCAACAUGGAUUUCCCCAAAUGGUGUCGUUCUCGAGGGUAGUAGAUGGCUGAGCUGUUUUCAUGCAUCGCAGCAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAGCGAGGGACUGCAC--| G U A A UGGAUUUC
AACGGCUCAGCUGUC ACU CCCU GAGGGC ACA \
UUGUCGAGUCGGUAG UGA GGGA CUCUUG UGU C
UCUACGACGCUACGUACUU^ A U G C GGUAAACC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Spu-Novel-1-P1_5p |
mirBase accession | None |
Sequence |
0- UCGACUUCCCUAGAGGGCAACA -22
Get sequence
|
Star sequence |
Spu-Novel-1-P1_3p* |
mirBase accession | None |
Sequence |
41- UCGUUCUCGAGGGUAGUAGAUG -63
Get sequence
|