| MirGeneDB ID | Spu-Novel-1-P1b |
|---|
| Family name |
SPU-NOVEL-1 (all species) |
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| Seed |
UUUAUGA |
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| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
|
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| Paralogues |
Spu-Novel-1-P1a
|
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| Orthologues |
|
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| Node of Origin (locus) |
S. purpuratus
|
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| Node of Origin (family) |
S. purpuratus
|
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Genome context
(Spur_5.0) |
AAGJ06000004.1: 20054437-20054500 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAAGUAAUACAAAUUUAUGCUCUGUCGGAUUUUAUGAUCGAGGAAGCAGAUGUGACAUUAUUAUAAGAAACACCUGCACUCUAUCAUAGAUGCCUGAAAGAGUUUUAAAUCUUCAGACGUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAAGUAAUACAAAUUUAU- G AU-| C GAA A GACAUUA
GCUCU UCGG UUUAUGAU GAG GCAG UGU U
UGAGA AGUC AGAUACUA CUC CGUC ACA U
AAGUGCAGACUUCUAAAUUU A CGU^ U A-- C AAGAAUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Spu-Novel-1-P1b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUUAUGAUCGAGGAAGCAGAUGU -24
Get sequence
|
|---|
| Star sequence |
Spu-Novel-1-P1b_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- ACCUGCACUCUAUCAUAGAUGC -64
Get sequence
|
|---|
