MirGeneDB ID | Spu-Novel-4 |
Family name |
SPU-NOVEL-4 (all species) |
Seed |
AGAUCUA |
Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
MiRBase ID |
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Paralogues |
|
Orthologues |
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Node of Origin (locus) |
S. purpuratus
|
Node of Origin (family) |
S. purpuratus
|
Genome context (Spur_5.0) |
AAGJ06000864.1: 1363762-1363838 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUACACAUGUGUUUUACAAUCUAUUUUUAGAAGAUCUAGCUCGUCCAGCAGCUCGGGUGGCGAAGUCUCUUCAAAUCUUUAGGCCGCUGUGUCGUGCUAGAUCUAUAUCAAAUGAAAAGAAAGAAAACAAAAUAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUACACAUGUGUUUUACAAUCUAUUUUUAGA-- U UC-| A UCGGGUGGCGAAGU
AGAUCUAGC CG CAGC GC C
UCUAGAUCG GC GUCG CG U
CUUAUAAAACAAAAGAAAGAAAAGUAAACUAUA U UGU^ C GAUUUCUAAACUUC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Spu-Novel-4_5p |
mirBase accession | None |
Sequence |
0- AAGAUCUAGCUCGUCCAGCAGC -22
Get sequence
|
Star sequence |
Spu-Novel-4_3p* |
mirBase accession | None |
Sequence |
54- CGCUGUGUCGUGCUAGAUCUAUA -77
Get sequence
|