| MirGeneDB ID | Sro-Mir-12496-P1 |
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| Family name |
MIR-12496 (all species) |
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| Seed |
UGUGCAU |
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| Species |
Roscoff worm (Symsagittifera roscoffensis) |
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| MiRBase ID |
|
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| Paralogues |
Sro-Mir-12496-P2
Sro-Mir-12496-P3
|
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| Orthologues |
Hmi-Mir-12496
Xbo-Mir-12496
|
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| Node of Origin (locus) |
S. roscoffensis
|
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| Node of Origin (family) |
Xenacoelomorpha
|
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Genome context
(GCA_025153585.1_SymRos_1_5_genomic) |
JANVAR010000125.1: 175645-175709 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GACAUUUUGUUCGAAACUCUUUCAGAAAAAUCCGCCAAAGACAUGAAUCAACAAAACCAUUUUGAGAGAAAUUGUUGUGCAUGCUUUGGUGGCUUUGUAAAAAGAGACGAAUCUUGUAUUUUAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACAUUUUGUUCGAAAC---| CAGAA U A AAU AAACCAUUU
UCUUU AAA CCGCCAAAG CAUG CAACA \
AGAAA UUU GGUGGUUUC GUAC GUUGU U
AAAUUUUAUGUUCUAAGCAG^ AAUG- C - GU- UAAAGAGAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Sro-Mir-12496-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- UCCGCCAAAGACAUGAAUCAACA -23
Get sequence
|
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| Mature sequence |
Sro-Mir-12496-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
44- UUGUGCAUGCUUUGGUGGCUU -65
Get sequence
|
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