MirGeneDB 3.0
MirGeneDB ID

Sro-Mir-34-P23

Family name MIR-34 (all species)
Seed GGCAGUG
Species Roscoff worm (Symsagittifera roscoffensis)
MiRBase ID
Paralogues Sro-Mir-34-P24 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) S. roscoffensis
Node of Origin (family) Bilateria
Genome context
(GCA_025153585.1_SymRos_1_5_genomic)		 JANVAR010000638.1: 302897-302965 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUCAUAACUGAGUUGCAUGACUUUCUGCGGCAGUGUGUCUUCCAGGGUUGAGAAAAAACAAUAAAUCGAAUCAACCCUGAUUUUACACUGCCACCAGUACAUGCUACACGAAAGUUAGAAGCCCAG
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Structure
        10             20        30         40        50        60    
AUUUUCAUAACUGAGUU-----|    ACUUU   C-         UCUUC        AGAAAAAACA 
                      GCAUG     CUG  GGCAGUGUG     CAGGGUUG          \
                      CGUAC     GAC  CCGUCACAU     GUCCCAAC          A
GACCCGAAGAUUGAAAGCACAU^    AU---   CA         UUUA-        UAAGCUAAAU 
       120       110          100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Po
Mature sequence

Sro-Mir-34-P23_5p
mirBase accessionNone
Sequence 
0- CGGCAGUGUGUCUUCCAGGGUUG -23
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Star sequence

Sro-Mir-34-P23_3p*
mirBase accessionNone
Sequence 
46- ACCCUGAUUUUACACUGCCACCA -69
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