MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-11622

Family name MIR-11622 (all species)
Seed AAAGGAA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11622
Paralogues
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG3: 1789933-1789990 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUACAAAAUAAAUUACUAAAUCAGUUGAUGUAAAGGAAUUGCAGGAUUGAAAUGUCUGCAGCGUUUUAGUCUUGUAAAUUCCUUUGGGUUUACUGAUAAAAAAGGGGGUGAUGGGUCU
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Structure
        10          20        30         40        50        
CUACAAAAUAAAUUACUAA--      U   G        -|             UGUCU 
                     AUCAGU GAU UAAAGGAA UUGCAGGAUUGAAA     \
                     UAGUCA UUG GUUUCCUU AAUGUUCUGAUUUU     G
UCUGGGUAGUGGGGGAAAAAA      U   G        A^             GCGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-11622_5p

mirBase accessionMIMAT0045517
Sequence
0- UAAAGGAAUUGCAGGAUUGAAA -22
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Star sequence

Tca-Mir-11622_3p*

mirBase accessionMIMAT0045518
Sequence
35- UUAGUCUUGUAAAUUCCUUUGGG -58
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