MirGeneDB ID | Tca-Mir-11630 |
Family name |
MIR-11630 (all species) |
Seed |
UCAAAUU |
Species |
Red flour beetle (Tribolium castaneum) |
MiRBase ID |
tca-mir-11630
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
T. castaneum
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Node of Origin (family) |
T. castaneum
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Genome context (Tcas5.2) |
LGX: 3971241-3971303 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CGCUGCUCCUGCCAGCUACUGGUCUAUUAGUCAGAUAUGGGUGGAAUGGUGAUGGUAAUCAUGAACACCCAUCAAAUUCAGUUAUGUCUGGCUGGAUACCAGUCUAUGACACAAUGCACGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGCUGCUCCUGCCAGCU---| CUA G AUGG UAAUCA
ACUGGU UUAGUCAGAUAUGG UGGA UGAUGG \
UGACCA GGUCGGUCUGUAUU ACUU ACUACC U
ACGGCACGUAACACAGUAUC^ UA- G AA-- CACAAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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Star sequence |
Tca-Mir-11630_5p* |
mirBase accession | MIMAT0045552 |
Sequence |
0- UCAGAUAUGGGUGGAAUGGUGAUGG -25
Get sequence
|
Mature sequence |
Tca-Mir-11630_3p |
mirBase accession | MIMAT0045553 |
Sequence |
40- AUCAAAUUCAGUUAUGUCUGGCU -63
Get sequence
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