MirGeneDB ID | Tca-Mir-3849 |
Family name |
MIR-3849 (all species) |
Seed |
GACAUUU |
Species |
Red flour beetle (Tribolium castaneum) |
MiRBase ID |
tca-mir-3849
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
T. castaneum
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Node of Origin (family) |
T. castaneum
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Genome context (Tcas5.2) |
LG5: 5505646-5505710 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCAUUUUGUUGUCGUAACUGUUCGAAAUGCUGACAUUUUAACCAUAGUGCUGUUGUUUAUAUUCAAAUUAAUAGCAUUGUGUUGGAAAUGUCGUCUUUUCGAACAAACUAGCACCGAUUAAGUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAUUUUGUUGUCGUAAC--| UGC AAC UGUUUAUA
UGUUCGAAA UGACAUUUU CAUAGUGCUGU \
ACAAGCUUU GCUGUAAAG GUGUUACGAUA U
AUUGAAUUAGCCACGAUCAA^ UCU GUU AUUAAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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Mature sequence |
Tca-Mir-3849_5p |
mirBase accession | MIMAT0018752 |
Sequence |
0- UGACAUUUUAACCAUAGUGCUGU -23
Get sequence
|
Star sequence |
Tca-Mir-3849_3p* |
mirBase accession | MIMAT0018753 |
Sequence |
42- AGCAUUGUGUUGGAAAUGUCGUC -65
Get sequence
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