MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-3853

Family name MIR-3853 (all species)
Seed UGUGUAU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3853
Paralogues
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG5: 5943323-5943381 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUCAUGAAAAAAUAUCCUUGUGCAUCUUGUGUGUAUUUUGUGAAAUGCUAUAGUUGAAUAUUUUAGUUUUUUUCAAAAUAUGCUCAUAAUGUGCAAGGGUGAUUUGUUAUCGGUUGG
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Structure
        10          20        30        40        50         
AUUUCAUGAAAAAAUAU--|    UG   CU  U          U    U    UAGUUG 
                   CCUUG  CAU  UG GUGUAUUUUG GAAA GCUA      \
                   GGAAC  GUA  AC CGUAUAAAAC UUUU UGAU      A
GGUUGGCUAUUGUUUAGUG^    GU   AU  U          U    U    UUUAUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-3853_5p

mirBase accessionMIMAT0018762
Sequence
0- GUGUGUAUUUUGUGAAAUGCUA -22
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Star sequence

Tca-Mir-3853_3p*

mirBase accessionMIMAT0018763
Sequence
37- GUUUUUUUCAAAAUAUGCUCAU -59
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