| MirGeneDB ID | Xla-Mir-12481-P2 |
|---|
| Family name |
MIR-12481 (all species) |
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| Seed |
CACCGAU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-12481-P1
|
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| Orthologues |
Xtr-Mir-12481
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Xenopus
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030741.1: 80970218-80970281 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUGGUCUUCCAUCGUGGAGUGCCACUUUACCACCGAUAUAUGCACCAAUUAUAGAAUUCAGUAACAUGAUGAUUGGCGCCUAUAUCAGAGGUAAGGUGGCAGUCCUGACAUCAAUCAGCUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUGGUCUUCCAUCGUG--| G ACC U A UAGAAUUC
GA UGCCACUUUACC GAUAUA GC CCAAUUA A
CU ACGGUGGAAUGG CUAUAU CG GGUUAGU G
GUGUCGACUAACUACAGUC^ G AGA C C AGUACAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-12481-P2_5p |
| mirBase accession | None |
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| Sequence |
0- CCACCGAUAUAUGCACCAAUUA -22
Get sequence
|
|---|
| Co-mature sequence |
Xla-Mir-12481-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AUUGGCGCCUAUAUCAGAGGUA -64
Get sequence
|
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