MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-12481

Family name MIR-12481 (all species)
Seed CACCGAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Xla-Mir-12481-P1  Xla-Mir-12481-P2 
Node of Origin (locus) Xenopus
Node of Origin (family) Xenopus
Genome context
(xenTro9_add)
chr9: 29268997-29269060 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGGUCUUCAAUCGUGGAGUGCCACUUUACCACCGAUAUAUGCACCAAUUAUAGGAUUCAGUAACAUGAUGAUUGGCGCCUAUAUCAGAGGUAAGGUGGCAGUCCUGACAUCAAUCAGCCGUG
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Structure
        10          20        30        40        50        60 
GCUGGUCUUCAAUCGUG--| G            ACC      U  A       UAGGAUUC 
                   GA UGCCACUUUACC   GAUAUA GC CCAAUUA        A
                   CU ACGGUGGAAUGG   CUAUAU CG GGUUAGU        G
GUGCCGACUAACUACAGUC^ G            AGA      C  C       AGUACAAU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-12481_5p

mirBase accessionNone
Sequence
0- CCACCGAUAUAUGCACCAAUUA -22
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Co-mature sequence

Xtr-Mir-12481_3p

mirBase accessionNone
Sequence
42- AUUGGCGCCUAUAUCAGAGGUA -64
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