MirGeneDB ID | Xtr-Mir-12481 |
Family name |
MIR-12481 (all species) |
Seed |
CACCGAU |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Xla-Mir-12481-P1
Xla-Mir-12481-P2
|
Node of Origin (locus) |
Xenopus
|
Node of Origin (family) |
Xenopus
|
Genome context (xenTro9_add) |
chr9: 29268997-29269060 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGGUCUUCAAUCGUGGAGUGCCACUUUACCACCGAUAUAUGCACCAAUUAUAGGAUUCAGUAACAUGAUGAUUGGCGCCUAUAUCAGAGGUAAGGUGGCAGUCCUGACAUCAAUCAGCCGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGGUCUUCAAUCGUG--| G ACC U A UAGGAUUC
GA UGCCACUUUACC GAUAUA GC CCAAUUA A
CU ACGGUGGAAUGG CUAUAU CG GGUUAGU G
GUGCCGACUAACUACAGUC^ G AGA C C AGUACAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-12481_5p |
mirBase accession | None |
Sequence |
0- CCACCGAUAUAUGCACCAAUUA -22
Get sequence
|
Co-mature sequence |
Xtr-Mir-12481_3p |
mirBase accession | None |
Sequence |
42- AUUGGCGCCUAUAUCAGAGGUA -64
Get sequence
|