MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-203-P7-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-203-P7-v2  Xla-Mir-203-P8-v1  Xla-Mir-203-P8-v2 
Orthologues Lch-Mir-203  Spt-Mir-203 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030738.1: 75310359-75310418 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCCUCACACAUUUCUGUCUCCCUGGCCAAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCGAAAUUGUGAAAUGUUUAGGACCACUUGAUCCGGGGGAUUCGCUCUGCCAGGCGUCAC
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Structure
        10          20        30        40        50          
GUGCCUCACACAUUUCU--|      U GC           U    G    A   UUCUCU 
                   GUCUCCC G  CAAGUGGUUCU AACA UUCA CAG      \
                   UAGGGGG C  GUUCACCAGGA UUGU AAGU GUU      A
CACUGCGGACCGUCUCGCU^      C UA           U    A    -   AAAGCU 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-203-P7-v1_5p*

mirBase accessionNone
Sequence
0- AGUGGUUCUUAACAGUUCAACAG -23
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Mature sequence

Xla-Mir-203-P7-v1_3p

mirBase accessionNone
Sequence
38- GUGAAAUGUUUAGGACCACUUG -60
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