| MirGeneDB ID | Xla-Novel-2-P1 |
|---|
| Family name |
XLA-NOVEL-2 (all species) |
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| Seed |
CCAACCU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Novel-2-P2
|
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030736.1: 111085530-111085589 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGACAUUGGAAGUACAUAUAACGGAGAUGACCAACCUGUGGUCCUUCAGAUGUUGCAGAUGUUACAUCUAGGGAGUUUCAGGUUGCACAUCCCUGUUUUAAAUAUCUUCAGGAUUCCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGACAUUGGAAGUACA-- U A AC UG -| C GUUGCA
UA AACGG GAUG CAACCUG G UCCUU AGAU G
AU UUGUC CUAC GUUGGAC U AGGGA UCUA A
AACCUUAGGACUUCUAUAA U C AC UU G^ - CAUUGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Novel-2-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCAACCUGUGGUCCUUCAGAU -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-2-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UCUAGGGAGUUUCAGGUUGCACA -60
Get sequence
|
|---|
