| MirGeneDB ID | Xla-Novel-2-P2 |
|---|
| Family name |
XLA-NOVEL-2 (all species) |
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| Seed |
CCAACCU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Novel-2-P1
|
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030737.1: 82127969-82128030 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCAUAUCGGAAAUACAUAUAACAGAGAUGACCAACCUGUGGUCCUUCAGAUGUUGCAACGGCUUUACAUCUAGGGGGUUUCAGGUUGCCCAUCCCUGUUUUAAAUGCCUUCAGGAUUCCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUCAUAUCGGAAAUACA--| U A AC U GU UC GUUGCAA
UA AACAG GAUG CAACCUG G CCU AGAU C
AU UUGUC CUAC GUUGGAC U GGG UCUA G
AACCUUAGGACUUCCGUAA^ U C CC U UG GA CAUUUCG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Novel-2-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCAACCUGUGGUCCUUCAGAU -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-2-P2_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- UCUAGGGGGUUUCAGGUUGCCCA -62
Get sequence
|
|---|
