MirGeneDB ID | Xtr-Mir-12477 |
Family name |
MIR-12477 (all species) |
Seed |
GAGGCUU |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Mun-Mir-12477
Xla-Mir-12477-P1
Xla-Mir-12477-P2
|
Node of Origin (locus) |
Amphibia
|
Node of Origin (family) |
Amphibia
|
Genome context (xenTro9_add) |
chr5: 86772848-86772905 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCCUCAGGAGGAUGCCAUUGGAGCUGCAUUGAGGCUUCCUACUUCAAGGCUGUGUUCUGACUCAUCCUAGAAGCUUGAAGCCUAGCUGCAUCUUCAACAGAGACGCACAGGAAUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCCUCAGGAGGAUGCCA--| C UUG CUA A C UGUU
UUGGAG UGCA AGGCUUC CUUC AGG UG C
AACUUC ACGU UCCGAAG GAAG UCC AC U
GUCUAAGGACACGCAGAGAC^ U CGA UUC A U UCAG
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-12477_5p |
mirBase accession | None |
Sequence |
0- UGAGGCUUCCUACUUCAAGGCUG -23
Get sequence
|
Co-mature sequence |
Xtr-Mir-12477_3p |
mirBase accession | None |
Sequence |
35- UCCUAGAAGCUUGAAGCCUAGCU -58
Get sequence
|