MirGeneDB ID | Xtr-Mir-12484 |
Family name |
MIR-12484 (all species) |
Seed |
AGGGAUC |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Xla-Mir-12484-P1-v1
Xla-Mir-12484-P1-v2
Xla-Mir-12484-P2-v1
Xla-Mir-12484-P2-v2
|
Node of Origin (locus) |
Xenopus
|
Node of Origin (family) |
Xenopus
|
Genome context (xenTro9_add) |
chr6: 71836723-71836780 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGCUGGAUCGCCGUUUCUCUGUCUCACACAGGGAUCUCGUGAUGCCGGCAAUGAAAGGCAUGUUCCGGCAUUGCGCAAUCCCAGUGUGAUGCAGGGGAUUUCAACUUGAUGAAUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGGCUGGAUCGCCGUU--| C A CU UG CAAUGAA
UCUCUGU UCACAC GGGAU CG AUGCCGG A
GGGGACG AGUGUG CCCUA GC UACGGCC G
CCUAAGUAGUUCAACUUUA^ U A AC GU UUGUACG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-12484_5p |
mirBase accession | None |
Sequence |
0- CAGGGAUCUCGUGAUGCCGGCA -22
Get sequence
|
Star sequence |
Xtr-Mir-12484_3p* |
mirBase accession | None |
Sequence |
36- CCGGCAUUGCGCAAUCCCAGUG -58
Get sequence
|