MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-12484

Family name MIR-12484 (all species)
Seed AGGGAUC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Xla-Mir-12484-P1-v1  Xla-Mir-12484-P1-v2  Xla-Mir-12484-P2-v1  Xla-Mir-12484-P2-v2 
Node of Origin (locus) Xenopus
Node of Origin (family) Xenopus
Genome context
(xenTro9_add)
chr6: 71836723-71836780 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGCUGGAUCGCCGUUUCUCUGUCUCACACAGGGAUCUCGUGAUGCCGGCAAUGAAAGGCAUGUUCCGGCAUUGCGCAAUCCCAGUGUGAUGCAGGGGAUUUCAACUUGAUGAAUCC
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Structure
        10          20        30        40        50        
UUGGCUGGAUCGCCGUU--|      C      A     CU  UG       CAAUGAA 
                   UCUCUGU UCACAC GGGAU  CG  AUGCCGG       A
                   GGGGACG AGUGUG CCCUA  GC  UACGGCC       G
CCUAAGUAGUUCAACUUUA^      U      A     AC  GU       UUGUACG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-12484_5p

mirBase accessionNone
Sequence
0- CAGGGAUCUCGUGAUGCCGGCA -22
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Star sequence

Xtr-Mir-12484_3p*

mirBase accessionNone
Sequence
36- CCGGCAUUGCGCAAUCCCAGUG -58
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