| MirGeneDB ID | Aga-Mir-2940-v1 |
|---|
| Family name |
MIR-2940 (all species) |
|---|
| Seed |
GUCGACA |
|---|
| Species |
African malaria mosquito (Anopheles gambiae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Aga-Mir-2940-v2
|
|---|
| Orthologues |
Aae-Mir-2940-v1
|
|---|
| Node of Origin (locus) |
Culicidae
|
|---|
| Node of Origin (family) |
Culicidae
|
|---|
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064600.1: 2843245-2843310 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUGAUCUGCGGACUGACACACUGCCUGCAUUGGUUUAUCUAGUCUGUCGAAACAAGUGAAUUUGCAAAAGUCUUGUCGACAGAGAGAUAAAUCACUGUUUGUGGUCCUAGACAACAGAGUUCCGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGAUCUGCGGACUGACAC--| UG CU U AG AA UGAAUUU
AC C GCA UGGUUUAUCU UCUGUCGA CAAG \
UG G UGU ACUAAAUAGA AGACAGCU GUUC G
GUGCCUUGAGACAACAGAUCC^ GU UU C G- -- UGAAAAC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
| |
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Aga-Mir-2940-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUUUAUCUAGUCUGUCGAAACAAG -26
Get sequence
|
|---|
| Mature sequence |
Aga-Mir-2940-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UGUCGACAGAGAGAUAAAUCACU -66
Get sequence
|
|---|
