MirGeneDB ID | Aga-Mir-2940-v2 |
Family name |
MIR-2940 (all species) |
Seed |
UCGACAG |
Species |
African malaria mosquito (Anopheles gambiae) |
MiRBase ID |
|
Paralogues |
Aga-Mir-2940-v1
|
Orthologues |
Aae-Mir-2940-v2
|
Node of Origin (locus) |
Culicidae
|
Node of Origin (family) |
Culicidae
|
Genome context (GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064600.1: 2843245-2843310 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGAUCUGCGGACUGACACACUGCCUGCAUUGGUUUAUCUAGUCUGUCGAAACAAGUGAAUUUGCAAAAGUCUUGUCGACAGAGAGAUAAAUCACUGUUUGUGGUCCUAGACAACAGAGUUCCGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGAUCUGCGGACUGACAC--| UG CU U AG AA GUGAAUUU
AC C GCA UGGUUUAUCU UCUGUCGA CAA \
UG G UGU ACUAAAUAGA AGACAGCU GUU G
GUGCCUUGAGACAACAGAUCC^ GU UU C G- -- CUGAAAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Ab |
Ab |
He |
He |
Mi |
Mi |
Ov |
Ov |
Ov |
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Star sequence |
Aga-Mir-2940-v2_5p* |
mirBase accession | None |
Sequence |
0- UGGUUUAUCUAGUCUGUCGAAACAA -25
Get sequence
|
Mature sequence |
Aga-Mir-2940-v2_3p |
mirBase accession | None |
Sequence |
44- GUCGACAGAGAGAUAAAUCACU -66
Get sequence
|