MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-2940-v2

Family name MIR-2940 (all species)
Seed UCGACAG
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID
Paralogues Aga-Mir-2940-v1 
Orthologues Aae-Mir-2940-v2 
Node of Origin (locus) Culicidae
Node of Origin (family) Culicidae
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064600.1: 2843245-2843310 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAUCUGCGGACUGACACACUGCCUGCAUUGGUUUAUCUAGUCUGUCGAAACAAGUGAAUUUGCAAAAGUCUUGUCGACAGAGAGAUAAAUCACUGUUUGUGGUCCUAGACAACAGAGUUCCGUG
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Structure
        10          20        30        40        50        60    
GUGAUCUGCGGACUGACAC--| UG CU   U          AG        AA   GUGAAUUU 
                     AC  C  GCA UGGUUUAUCU  UCUGUCGA  CAA        \
                     UG  G  UGU ACUAAAUAGA  AGACAGCU  GUU        G
GUGCCUUGAGACAACAGAUCC^ GU UU   C          G-        --   CUGAAAAC 
    120       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-2940-v2_5p*

mirBase accessionNone
Sequence
0- UGGUUUAUCUAGUCUGUCGAAACAA -25
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Mature sequence

Aga-Mir-2940-v2_3p

mirBase accessionNone
Sequence
44- GUCGACAGAGAGAUAAAUCACU -66
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