MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-2940-v2

Family name MIR-2940 (all species)
Seed UCGACAG
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-2940
Paralogues Aae-Mir-2940-v1 
Orthologues Aga-Mir-2940-v2 
Node of Origin (locus) Culicidae
Node of Origin (family) Culicidae
Genome context
(Aaeg_L3)		 supercont1.222: 643960-644064 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2940-v2)		 Mir-2940-v1 supercont1.222: 643960-644064 [+] Ensembl
Mir-2940-v2 supercont1.222: 643960-644064 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUGCGAUUGCAGCAGAUCUUGGAGACAUUGGUUUAUCUUAUCUGUCGAGGCAAGUUAUUUUACCGGAUAGUGUUUCUUUUCGUGAGCAAUCACCACUAUCCAGCUCUUCUUGUCGACAGGGAGAUAAAUCACUGACAUCCGAUGGUCAUUCAUCGAAGGUGGC
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Structure
        10        20          30        40        50        60        70        80  
UGGUGCGAUUGCAGCAGAUC-     GA-| U           A        GGCAAGUUAUUUUACCGGAUAGUGUUUCUUU 
                     UUGGA   CA UGGUUUAUCUU UCUGUCGA                               U
                     AGCCU   GU ACUAAAUAGAG GGACAGCU                               C
CGGUGGAAGCUACUUACUGGU     ACA^ C           -        GUUCUUCUCGACCUAUCACCACUAACGAGUG 
   160       150       140       130        120       110       100        90
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So To To To
Star sequence

Aae-Mir-2940-v2_5p*
mirBase accessionMIMAT0014283
Sequence 
0- UGGUUUAUCUUAUCUGUCGAGG -22
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Mature sequence

Aae-Mir-2940-v2_3p
mirBase accessionMIMAT0014284
Sequence 
83- GUCGACAGGGAGAUAAAUCACU -105
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