| MirGeneDB ID | Asp-Mir-2028-P1 |
|---|
| Family name |
MIR-2028 (all species) |
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| Seed |
UAGAACC |
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| Species |
Deep-sea anemone (Actinernus sp.) |
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| MiRBase ID |
|
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| Paralogues |
Asp-Mir-2028-P2a
Asp-Mir-2028-P2b
|
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| Orthologues |
Nve-Mir-2028
|
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| Node of Origin (locus) |
Actinernus sp.
|
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| Node of Origin (family) |
Anenthemonae
|
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Genome context
(GCA_030867875.1_CUHK_Acti_1.0_genomic) |
JAOWCC010001501.1: 36466391-36466439 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAUGGAGGUUGUGGCAGACUUUGGAGCUCAAAUGUUCCUGCUUGUUCCUAUUUAUUAGAACCGAGCAGGAACAUUUCACUUACAAUAGUCACUAUUCAGAAGGACACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAUGGAGGUUGUGGCA- - -| CUC UUC UU
GACU UUG GAG AAAUGUUCCUGCUUG CUA \
CUGA AAC UUC UUUACAAGGACGAGC GAU U
ACACAGGAAGACUUAUCA U A^ AC- CAA UA
100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a 1 nt snp at position 1 of the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Asp-Mir-2028-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAAUGUUCCUGCUUGUUCCUAUU -23
Get sequence
|
|---|
| Mature sequence |
Asp-Mir-2028-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
25- UUAGAACCGAGCAGGAACAUUUCA -49
Get sequence
|
|---|
