| MirGeneDB ID | Nve-Mir-2028 |
|---|
| Family name |
MIR-2028 (all species) |
|---|
| Seed |
AAUGUUC |
|---|
| Species |
Starlet sea anemone (Nematostella vectensis) |
|---|
| MiRBase ID |
nve-mir-2028
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Asp-Mir-2028-P1
Asp-Mir-2028-P2a
Asp-Mir-2028-P2b
|
|---|
| Node of Origin (locus) |
Anenthemonae
|
|---|
| Node of Origin (family) |
Anenthemonae
|
|---|
Genome context
(GCF_000209225.1_ASM20922v1_NVE) |
NW_001834408.1: 334216-334264 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGACAAUGAUGGUGUAGGACGAUGGAGUCUUAAUGUUCCUGCUUGUUCCUAUAUAUUAGGAACUAGCAGGAGCAUUAAGAUUACAGUCGUCAAUAAACACGGAUUACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGACAAUGAUGGUGUAG- GG-| U UA
GACGAU AGUCUUAAUGUUCCUGCU GUUCCUA \
CUGCUG UUAGAAUUACGAGGACGA CAAGGAU U
GACAUUAGGCACAAAUAA ACA^ U UA
100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There are Dicer cuts +1 and -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Nve-Mir-2028_5p |
| mirBase accession | MIMAT0009776 |
|---|
| Sequence |
0- UAAUGUUCCUGCUUGUUCCUAU -22
Get sequence
|
|---|
| Star sequence |
Nve-Mir-2028_3p* |
| mirBase accession | MIMAT0009777 |
|---|
| Sequence |
27- AGGAACUAGCAGGAGCAUUAAG -49
Get sequence
|
|---|
