MirGeneDB 3.0

MirGeneDB ID

Asu-Mir-77

Family name MIR-77 (all species)
Seed UCAUCAG
Species Large roundworm (Ascaris suum)
MiRBase ID
Paralogues
Orthologues Cbr-Mir-77-P1  Cbr-Mir-77-P2  Cel-Mir-77 
Node of Origin (locus) Chromadorea
Node of Origin (family) Chromadorea
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold523: 78463-78521 [-]
Precursor
(pre-Mir +30nt flank)
AAAAAAACCUGAAAUUAUCGAUUAUUCGCAGCCUAAAAUUGACCGAUGAGAUUUGUAUUUGAAUAUUUCAUCAGGCCAAUUUUAGUCUUCGAUGAACGAUUUUCAUUCCUCUUACGCCA
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Structure
        10           20        30        40         50        
AAAAAAACCUGAAAUUA---|  A    U  C  C         A  -        UUGUA 
                    UCG UUAU CG AG CUAAAAUUG CC GAUGAGAU     U
                    AGC AGUA GC UC GAUUUUAAC GG CUACUUUA     U
ACCGCAUUCUCCUUACUUUU^  A    -  U  U         C  A        UAAGU 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-77_5p*

mirBase accessionNone
Sequence
0- GCCUAAAAUUGACCGAUGAGAU -22
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Mature sequence

Asu-Mir-77_3p

mirBase accessionNone
Sequence
36- UUCAUCAGGCCAAUUUUAGUCUU -59
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