MirGeneDB ID | Asu-Mir-77 |
Family name |
MIR-77 (all species) |
Seed |
UCAUCAG |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
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Paralogues |
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Orthologues |
Cbr-Mir-77-P1
Cbr-Mir-77-P2
Cel-Mir-77
|
Node of Origin (locus) |
Chromadorea
|
Node of Origin (family) |
Chromadorea
|
Genome context (ASU_PRJNA80881_plustraces) |
Scaffold523: 78463-78521 [-]
|
Precursor (pre-Mir +30nt flank) |
AAAAAAACCUGAAAUUAUCGAUUAUUCGCAGCCUAAAAUUGACCGAUGAGAUUUGUAUUUGAAUAUUUCAUCAGGCCAAUUUUAGUCUUCGAUGAACGAUUUUCAUUCCUCUUACGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAAAAACCUGAAAUUA---| A U C C A - UUGUA
UCG UUAU CG AG CUAAAAUUG CC GAUGAGAU U
AGC AGUA GC UC GAUUUUAAC GG CUACUUUA U
ACCGCAUUCUCCUUACUUUU^ A - U U C A UAAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Star sequence |
Asu-Mir-77_5p* |
mirBase accession | None |
Sequence |
0- GCCUAAAAUUGACCGAUGAGAU -22
Get sequence
|
Mature sequence |
Asu-Mir-77_3p |
mirBase accession | None |
Sequence |
36- UUCAUCAGGCCAAUUUUAGUCUU -59
Get sequence
|