MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-77

Family name MIR-77 (all species)
Seed UCAUCAG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-77
Paralogues
Orthologues Asu-Mir-77  Cbr-Mir-77-P1  Cbr-Mir-77-P2 
Node of Origin (locus) Chromadorea
Node of Origin (family) Chromadorea
Genome context
(ce11)
chrII: 12519291-12519350 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUUGCAUCUGCCAAACCGCCCGUUUGGAUGGUUGUGCUCUGAGGAAAUACGCACAGAAUGUCAUUUCAUCAGGCCAUAGCUGUCCAAAUUGGUAUAGAGUUUGGAAUGUUGAAUCA
Get precursor sequence
Structure
        10        20          30        40        50         
UUUUUUUGCAUCUGCCAAACC--|  C               CU    G     ACGCAC 
                       GCC GUUUGGAUGGUUGUG  CUGA GAAAU      A
                       UGG UAAACCUGUCGAUAC  GACU CUUUA      G
ACUAAGUUGUAAGGUUUGAGAUA^  U               CG    A     CUGUAA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-77_5p*

mirBase accessionMIMAT0020774
Sequence
0- GAUGGUUGUGCUCUGAGGAAAU -22
Get sequence
Mature sequence

Cel-Mir-77_3p

mirBase accessionMIMAT0000049
Sequence
38- UUCAUCAGGCCAUAGCUGUCCA -60
Get sequence
Proposed targets microrna.org: MIMAT0000049
TargetScanWorm: cel-miR-77