| MirGeneDB ID | Ava-Mir-12596-P2 |
|---|
| Family name |
MIR-12596 (all species) |
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| Seed |
AGAUGUA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-12596-P1
|
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| Orthologues |
Bko-Mir-12596
Bpl-Mir-12596
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075492.1: 11082657-11082718 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCAAAAAAAACAUACACCGUUCAUUAUUGAGAUGUAUCUUUACUGAGCGGUUGAUUUCUAAUAUUCCGCUUAGUAUCGCUGCAUCUUCAACAAUCGGAUUCGGUAUAAUCAAUCGAACGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUCAAAAAAAACAUACA-----| UUC A - UCUU UUGAUUU
CCG AUU UUGA GAUGUA UACUGAGCGG \
GGC UAA AACU CUACGU AUGAUUCGCC C
AGCAAGCUAACUAAUAUGGCUUA^ --- C U CGCU UUAUAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Ava-Mir-12596-P2_5p |
| mirBase accession | None |
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| Sequence |
0- GAGAUGUAUCUUUACUGAGCGG -22
Get sequence
|
|---|
| Star sequence |
Ava-Mir-12596-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- GCUUAGUAUCGCUGCAUCUUCAA -62
Get sequence
|
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