MirGeneDB 3.0

MirGeneDB ID

Bko-Mir-12596

Family name MIR-12596 (all species)
Seed AGAUGUA
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12596-P1  Ava-Mir-12596-P2  Bpl-Mir-12596 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)
PJRA01000018.1: 85106-85187 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACAGAUUCUUCACUUGAAACAUAGCAUUGAGAUGUAUUGUUAACUAACCGUAGAUUUUAAGACAAUUUAGAUUCAGAUCUAAAUUUGGUUGGUUAAUUUUACGUCUACACUGUCAUUGUUUCAUAACCCAACACUCAUCA
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Structure
        10         20         30         40        50        60          
UCACAGAUUCUUCACUU-      UA-   U  -|      UU            UAGAUUUUAAGACAAUU 
                  GAAACA   GCA UG AGAUGUA  GUUAACUAACCG                 \
                  CUUUGU   UGU AC UCUGCAU  UAAUUGGUUGGU                 U
ACUACUCACAACCCAAUA      UAC   C  A^      UU            UUAAAUCUAGACUUAGA 
140       130       120       110       100        90        80
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
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Mature sequence

Bko-Mir-12596_5p

mirBase accessionNone
Sequence
0- GAGAUGUAUUGUUAACUAACCG -22
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Star sequence

Bko-Mir-12596_3p*

mirBase accessionNone
Sequence
59- GUUGGUUAAUUUUACGUCUACAC -82
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