MirGeneDB 3.0

MirGeneDB ID

Bpl-Mir-12596

Family name MIR-12596 (all species)
Seed AGAUGUA
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12596-P1  Ava-Mir-12596-P2  Bko-Mir-12596 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(Bpl_ASM1027981)
QEOQ01000192.1: 1028040-1028121 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCACUAUUCAAACUUAGAACAUAGCAUUGAGAUGUAUUGUUAACUAACCGUAGAUUUAAUGAUUGUUUAGAUUCUUGUCUAAAUUUGGUUGGUUAAUUUUACGUCUACACUGUCAUUGUUUCUUCACUCAUCUGUUAAAA
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Structure
        10         20         30         40        50        60          
ACUCACUAUUCAAACUUA-     UA-   U  -|      UU            UAGAUUUAAUGAUUGUU 
                   GAACA   GCA UG AGAUGUA  GUUAACUAACCG                 \
                   UUUGU   UGU AC UCUGCAU  UAAUUGGUUGGU                 U
AAAAUUGUCUACUCACUUC     UAC   C  A^      UU            UUAAAUCUGUUCUUAGA 
140       130       120       110       100        90        80
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Bpl-Mir-12596_5p

mirBase accessionNone
Sequence
0- GAGAUGUAUUGUUAACUAACCG -22
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Star sequence

Bpl-Mir-12596_3p*

mirBase accessionNone
Sequence
59- GUUGGUUAAUUUUACGUCUACAC -82
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