MirGeneDB ID | Bpl-Mir-12596 |
Family name |
MIR-12596 (all species) |
Seed |
AGAUGUA |
Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Ava-Mir-12596-P1
Ava-Mir-12596-P2
Bko-Mir-12596
|
Node of Origin (locus) |
Rotifera
|
Node of Origin (family) |
Rotifera
|
Genome context (Bpl_ASM1027981) |
QEOQ01000192.1: 1028040-1028121 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACUCACUAUUCAAACUUAGAACAUAGCAUUGAGAUGUAUUGUUAACUAACCGUAGAUUUAAUGAUUGUUUAGAUUCUUGUCUAAAUUUGGUUGGUUAAUUUUACGUCUACACUGUCAUUGUUUCUUCACUCAUCUGUUAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACUCACUAUUCAAACUUA- UA- U -| UU UAGAUUUAAUGAUUGUU
GAACA GCA UG AGAUGUA GUUAACUAACCG \
UUUGU UGU AC UCUGCAU UAAUUGGUUGGU U
AAAAUUGUCUACUCACUUC UAC C A^ UU UUAAAUCUGUUCUUAGA
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Bpl-Mir-12596_5p |
mirBase accession | None |
Sequence |
0- GAGAUGUAUUGUUAACUAACCG -22
Get sequence
|
Star sequence |
Bpl-Mir-12596_3p* |
mirBase accession | None |
Sequence |
59- GUUGGUUAAUUUUACGUCUACAC -82
Get sequence
|