| MirGeneDB ID | Ava-Mir-12597 |
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| Family name |
MIR-12597 (all species) |
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| Seed |
UGCACAA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bko-Mir-12597
Bpl-Mir-12597
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| Node of Origin (locus) |
Rotifera
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| Node of Origin (family) |
Rotifera
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 14276429-14276507 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAAUCAGAUCAUUAAUGCUGCUGAAGGUGUUGCACAAUCUAUAUGAGACCUUCUUUUUAUUUCAUGUGAUAUUGUGAAAAAUUAGGUCUUGUCUAGUUCUGUGCAUCAUGUUCGCUGCUAUAUACCUCGACGAAUUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAAUCAGAUCAUUAAU---| U U G U AU- U UG UCUUUUUAUUUCAUG
GC GC GAA GUG UGCACA CUA A AGACCU U
CG CG CUU UAC ACGUGU GAU U UCUGGA G
UAUUAAGCAGCUCCAUAUAU^ U - G U CUU C GU UUAAAAAGUGUUAUA
130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Ava-Mir-12597_5p |
| mirBase accession | None |
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| Sequence |
0- UUGCACAAUCUAUAUGAGACCU -22
Get sequence
|
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| Star sequence |
Ava-Mir-12597_3p* |
| mirBase accession | None |
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| Sequence |
56- GUCUUGUCUAGUUCUGUGCAUCA -79
Get sequence
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