| MirGeneDB ID | Bko-Mir-12597 |
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| Family name |
MIR-12597 (all species) |
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| Seed |
UGCACAA |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Ava-Mir-12597
Bpl-Mir-12597
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| Node of Origin (locus) |
Rotifera
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| Node of Origin (family) |
Rotifera
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000297.1: 510024-510085 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAAAAUAUUACACUUGAAAUCAAAUUUUAUUGCACAAUCUACAUUGGACCUUAGCAUUUGAGAACAGGUCUUUUGUAAAUUUGUGCAUGUAAAUUUUGACUGAAGCUCUUCCAUCGAAUCU
Get precursor sequence
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| Structure | 10 20 30 40 50
AAAAAAUAUUACACUUGAAA-- U - UC-| UU UAGCAU
UCAAA UUUAU UGCACAA UACA GGACCU U
AGUUU AAAUG ACGUGUU AUGU UCUGGA U
UCUAAGCUACCUUCUCGAAGUC U U UAA^ UU CAAGAG
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Bko-Mir-12597_5p |
| mirBase accession | None |
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| Sequence |
0- UUGCACAAUCUACAUUGGACCU -22
Get sequence
|
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| Star sequence |
Bko-Mir-12597_3p* |
| mirBase accession | None |
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| Sequence |
38- GUCUUUUGUAAAUUUGUGCAUGUA -62
Get sequence
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