MirGeneDB ID | Ava-Novel-5-P1a |
Family name |
AVA-NOVEL-5 (all species) |
Seed |
UACUAUU |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Novel-5-P1b
Ava-Novel-5-P2a
Ava-Novel-5-P2b
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Orthologues |
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
A. vaga
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075493.1: 7274956-7275019 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUUUGUUGAUAAACUUCGAGUAUUCUCUGCUUACUAUUUCCUCAAUUGUCACUGGAUUUCUUUAACAUAUGUGACGACUGAAGUCGUAGUACAUAGAAGAGACUCACAGAUCUUCCUGAACAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUGUUGAUAAACUUC--| A - CU UUCC A UGGAUUUC
GAGU UUCU CUG UACUAU UCA UUGUCAC U
CUCA GAGA GAU AUGAUG AGU AGCAGUG U
CUACAAGUCCUUCUAGACA^ - A AC CUGA C UAUACAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ava-Novel-5-P1a_5p |
mirBase accession | None |
Sequence |
0- UUACUAUUUCCUCAAUUGUCAC -22
Get sequence
|
Star sequence |
Ava-Novel-5-P1a_3p* |
mirBase accession | None |
Sequence |
42- GACGACUGAAGUCGUAGUACAU -64
Get sequence
|