| MirGeneDB ID | Ava-Novel-5-P1a |
|---|---|
| Family name | AVA-NOVEL-5 (all species) |
| Seed | UACUAUU |
| Species | Bdelloid rotifer (Adineta vaga) |
| MiRBase ID | |
| Paralogues | Ava-Novel-5-P1b Ava-Novel-5-P2a Ava-Novel-5-P2b |
| Orthologues | |
| Node of Origin (locus) | A. vaga |
| Node of Origin (family) | A. vaga |
| Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075493.1: 7274956-7275019 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UUUUGUUGAUAAACUUCGAGUAUUCUCUGCUUACUAUUUCCUCAAUUGUCACUGGAUUUCUUUAACAUAUGUGACGACUGAAGUCGUAGUACAUAGAAGAGACUCACAGAUCUUCCUGAACAUCGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUUUGUUGAUAAACUUC--| A - CU UUCC A UGGAUUUC GAGU UUCU CUG UACUAU UCA UUGUCAC U CUCA GAGA GAU AUGAUG AGU AGCAGUG U CUACAAGUCCUUCUAGACA^ - A AC CUGA C UAUACAAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Ava-Novel-5-P1a_5p |
| mirBase accession | None |
| Sequence |
0- UUACUAUUUCCUCAAUUGUCAC -22
Get sequence
|
| Star sequence | Ava-Novel-5-P1a_3p* |
| mirBase accession | None |
| Sequence |
42- GACGACUGAAGUCGUAGUACAU -64
Get sequence
|
