| MirGeneDB ID | Ava-Novel-5-P2a |
|---|---|
| Family name | AVA-NOVEL-5 (all species) |
| Seed | UACUAUU |
| Species | Bdelloid rotifer (Adineta vaga) |
| MiRBase ID | |
| Paralogues | Ava-Novel-5-P1a Ava-Novel-5-P1b Ava-Novel-5-P2b |
| Orthologues | |
| Node of Origin (locus) | A. vaga |
| Node of Origin (family) | A. vaga |
| Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075496.1: 5439712-5439773 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | GACGAAUAUGACUAAUCGGGCUCCUUAUUCUUACUAUUGUUUUAUACUGUAGUCGACAUUUUUCAAAUCUACAGUAUUCUACAGUAGUAACAUGAGUGAUGUCAUUAGACGACCAUUAUAUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GACGAAUAUGACUAAUCG- - -| UC UUU UCGACAU GGC UC CUUAU UUACUAUUGU AUACUGUAG U CUG AG GAGUA AAUGAUGACA UAUGACAUC U UUAUAUUACCAGCAGAUUA U U^ C- UCU UAAACUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Ava-Novel-5-P2a_5p |
| mirBase accession | None |
| Sequence |
0- UUACUAUUGUUUUAUACUGUAG -22
Get sequence
|
| Star sequence | Ava-Novel-5-P2a_3p* |
| mirBase accession | None |
| Sequence |
40- ACAGUAUUCUACAGUAGUAACA -62
Get sequence
|
